So this is our first bug in a published code in IPOL. Since the published code cannot be changed, we will have to publish the erratum and to change the demo code. <div class="gmail_quote">On Sun, Oct 14, 2012 at 6:14 PM, Miguel Colom <<a href="mailto:Miguel.Colom@cmla.ens-cachan.fr" target="_blank">Miguel.Colom@cmla.ens-cachan.fr</a>> wrote: <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Mauricio and I have done the tests in the same image and we both get the same problem with the current code. When we add our solution, the problem is solved. To show the problem clearly, I've made that the noise generator gives exactly the same noise values, so the difference between the images are caused by the algorithm, not by the noise. I've uploaded a version of the output image (sigma=3, block=win=1) using the current implementation (denoised_err.png) and the same with the corrected code (denoised_corr.png). You can see the bad pixels. One of them is near the third antenna, for example. The image can be downloaded here for comparison: <a href="http://dev.ipol.im/~colom/bad_pixels/" target="_blank">http://dev.ipol.im/~colom/bad_pixels/</a> Mauricio has also done his own tests with the same parameters and he obtains similar results (bad pixels in the original code and without them with our modification). His images can be downloaded from here: <a href="http://dev.ipol.im/~mdelbra/bug/" target="_blank">http://dev.ipol.im/~mdelbra/bug/</a> Best, Miguel Quoting Jean-Michel Morel <<a href="mailto:Jean-Michel.Morel@cmla.ens-cachan.fr" target="_blank">Jean-Michel.Morel@cmla.ens-cachan.fr</a>>: <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im"> Can you test it on the same image? Best, JM On Sun, Oct 14, 2012 at 5:29 PM, Miguel Colom < <a href="mailto:Miguel.Colom@cmla.ens-cachan.fr" target="_blank">Miguel.Colom@cmla.ens-cachan.fr</a>> wrote: </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im"> Dear all, Mauricio and I have found a way to modify the code to avoid the critical sections (SO mutex, slow) and use atomic operations (hardware lock, very fast). The source code as published currently in IPOL is absolutely buggy. So, to correct the code you have to put a "#pragma omp atomic" at the beginning of lines 229 (fpCount[il]++) and another for line 232 (fpO[ii][il] += fpODenoised[ii][iindex] / fTotalWeight;) in libdenoising.cpp Best, Miguel </div> Quoting Miguel Colom <Miguel.Colom@cmla.ens-cachan.**fr<<a href="mailto:Miguel.Colom@cmla.ens-cachan.fr" target="_blank">Miguel.Colom@cmla.ens-cachan.fr</a>> >: Hi, <blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5"> I think the problem is at line 232: fpO[ii][il] += fpODenoised[ii][iindex] / fTotalWeight; The fpODenoised is private for every thread, so it's not problematic. Perhaps instead of protecting the loop with a critical section, it'd be faster to just declare the fpO update at line 232 as an atomic operation: #pragma omp atomic fpO[ii][il] += fpODenoised[ii][iindex] / fTotalWeight; Best, Miguel Quoting Mauricio Delbracio <<a href="mailto:mdelbra@gmail.com" target="_blank">mdelbra@gmail.com</a>>: Dear all, </div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5"> I may have found a bug in the NL-means IPOL implementation. The problem is due to parallelism, particularly when updating shared values by more than one threading (race condition, race bug). In NL-means this happens in the filtered image (fpO) which is shared and updated by all the threads. The image is decomposed in overlapped patches that are denoised each of them separately, and then they are aggregated in the final image (fpO). The problem is that when the update of fpO takes place, may happen that two overlapped patches running in different threads try to update the same memory address. This not happen very frequently, since it is very unlikely that two overlapped patches take the same amount of time to arrive at that part of the code...The probability of this to happen increases if the search block (the block where similar patches are searched) is very small. To eliminate the bug, the way I found (a.k.a the easy way) is to enclose the writing of fpO in a "omp critical" block. This means that only one thread at at a time can write in fpO (there's a loss in execution time, probably there other ways of avoiding this problem, e.g. by using local memory blocks and then update at the end? i don't know I'm not really familiar with OpenMP). I attach a possible patch to libdenoising.cpp. The block of code I refer is in libdenoising.cpp between lines 219-238 </div></div><a href="http://www.ipol.im/pub/art/**2011/bcm_nlm/srcdoc/**" target="_blank">http://www.ipol.im/pub/art/**2011/bcm_nlm/srcdoc/**</a> libdenoising_8cpp_source.html<<a href="http://www.ipol.im/pub/art/2011/bcm_nlm/srcdoc/libdenoising_8cpp_source.html" target="_blank">http://www.ipol.im/pub/art/2011/bcm_nlm/srcdoc/libdenoising_8cpp_source.html</a>><div class="im"> I also attach an image showing the effect of the bug (parameters bloc=1, win=1) and some pixels that I manually marked. I appreciate any feedback (there are surely many OpenMP experts in this mailing-list), so let me know what you think. best m </div></blockquote> ______________________________**_________________ discuss mailing list <a href="mailto:discuss@list.ipol.im" target="_blank">discuss@list.ipol.im</a> <a href="https://tools.ipol.im/mailman/**listinfo/discuss" target="_blank">https://tools.ipol.im/mailman/**listinfo/discuss</a><<a href="https://tools.ipol.im/mailman/listinfo/discuss" target="_blank">https://tools.ipol.im/mailman/listinfo/discuss</a>> </blockquote> ______________________________**_________________ discuss mailing list <a href="mailto:discuss@list.ipol.im" target="_blank">discuss@list.ipol.im</a> <a href="https://tools.ipol.im/mailman/**listinfo/discuss" target="_blank">https://tools.ipol.im/mailman/**listinfo/discuss</a><<a href="https://tools.ipol.im/mailman/listinfo/discuss" target="_blank">https://tools.ipol.im/mailman/listinfo/discuss</a>> </blockquote> </blockquote><div class="HOEnZb"><div class="h5"> _______________________________________________ discuss mailing list <a href="mailto:discuss@list.ipol.im" target="_blank">discuss@list.ipol.im</a> <a href="https://tools.ipol.im/mailman/listinfo/discuss" target="_blank">https://tools.ipol.im/mailman/listinfo/discuss</a> </div></div></blockquote></div>